2017-09-16 02:49:30,821 DEBUG root about to write control file parameters to --yearbase 2017 --cruisename EX1708_05 --configtype python --sonar os38bb --dbname a_ex --datatype uhdas --cfgpath /home/data/EX1708_05/proc/os38bb/config --ens_len 300 #--update_gbin ## python gbins: run by "run_lastensq.py" at sea #offset between transducer and gps, applied in at-sea processing # NOTE : read special instructions to change offsets # diagnostics in cal/watertrk/guess_xducerxy.out # parameters used: --xducer_dx 0 --xducer_dy 0 ## see config/EX1708_05_proc.py for other settings --skip_avg ## see above --max_search_depth 2000 --ping_headcorr --proc_engine python --refuv_smoothwin 3 --incremental --find_pflags --top_plotbin 1 --auto 2017-09-16 02:49:30,821 DEBUG quick_adcp sys.argv = /usr/local/currents/bin/run_quick.py -d os38bb 2017-09-16 02:49:30,822 DEBUG quick_setup found cruise_info.hcorr (posmv, pmv, 0) 2017-09-16 02:49:30,822 DEBUG quick_setup no heading correction will be used within the ensembles but values are staged in cal/rotate/hcorr.asc 2017-09-16 02:49:30,822 INFO quick_setup fix file is a_ex.gps 2017-09-16 02:49:30,822 INFO quick_setup reflayer: ref_method = refsm 2017-09-16 02:49:30,822 INFO quick_setup reflayer: refuv_source = nav 2017-09-16 02:49:30,823 INFO quick_setup reflayer: refuv_smoothwin = 3 2017-09-16 02:49:30,823 INFO quick_adcp importing numpy version 1.8.2 2017-09-16 02:49:30,835 INFO quick_adcp importing matplotlib version 1.4.3 2017-09-16 02:49:30,942 DEBUG quick_mpl in Q_mpl 2017-09-16 02:49:30,942 INFO quick_adcp ===================================================== 2017-09-16 02:49:30,942 INFO quick_adcp ===================================================== 2017-09-16 02:49:30,942 INFO quick_adcp command line was: /usr/local/currents/bin/run_quick.py -d os38bb 2017-09-16 02:49:30,942 INFO quick_adcp cwd is /home/data/EX1708_05/proc/os38bb about to run these steps: - write_clearflags - scandata - avg_and_load - codaseditsetup - setflags - getnav - lst_hdg - plot_headcorr - navsteps - find_pflags - apply_edit - navsteps - lst_temp - plot_temp - lst_npings - calib - matfiles - adcpsect - refabs - smoothnav - putnav - refplots - find_pflags - codaseditsetup 2017-09-16 02:49:30,942 DEBUG quick_asect extracting matlab files for os38bb 2017-09-16 02:49:30,942 DEBUG quick_asect cannot determine top_plotbin. reverting to firstdepth 2017-09-16 02:49:30,942 DEBUG quick_setup data directory: /home/data/EX1708_05/raw/os38 2017-09-16 02:49:30,942 INFO quick_setup found 1 files using wildcard expansion relative to scan directory wildcard string was: "/home/data/EX1708_05/raw/os38/*.raw" 2017-09-16 02:49:30,942 DEBUG quick_setup found 1 files from original filelist 2017-09-16 02:49:30,942 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/EX1708_05/raw/os38/ex2017_257_58760.raw ... 2017-09-16 02:49:30,943 DEBUG quick_adcp Sat Sep 16 02:49:30 2017 running quick_adcp.py as follows: --cntfile /home/data/EX1708_05/proc/os38bb/os38bb_qpy.cnt ----- adcpsect variables ------ cbasename contour dbname a_ex dbpath ../adcpdb deeper_boundaries [100, 150, 200, 250, 300, 350, 400, 450, 500, 550, 600, 650, 700, 750, 800, 850, 900, 950, 1000, 1050, 1100, 1150, 1200, 1250, 1300, 1350, 1400, 1450, 1500, 1550, 1600] firstdepth 45 gridnum 80 increment 20 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2017 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ adjust_time 1 auto True badbeam None beamangle None bl_half_width 3 btrk_step 1.5 cfgpath /home/data/EX1708_05/proc/os38bb/config cntfile /home/data/EX1708_05/proc/os38bb/os38bb_qpy.cnt commands None configtype python cruisename EX1708_05 data_def vmadcp.def data_filelist None datadir /home/data/EX1708_05/raw/os38 datafile_glob *.raw datatype uhdas dbname a_ex dday_bailout None debug False ens_len 300 expert None filelist ['/home/data/EX1708_05/raw/os38/ex2017_257_58760.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 45 fixfile a_ex.gps fixfilexy a_ex.agt frequency 38 hcorr_inst posmv help False incremental True instname os38 jitter 15 max_BLKprofiles 300 max_search_depth 2000 maxrunsecs None min_filter_fraction 0.5 mixed_pings False model os nosave_editcfg 0 numbins 128 pgmin 50 ping_headcorr True pingpref None pingtype bb printformats png proc_engine python proc_yearbase 2017 py_gbindirbase /home/data/EX1708_05/gbin ref_method refsm refuv_inputfile a_ex.gps refuv_smoothwin 3 refuv_source nav rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 save_lastens 0 skip_avg True sonar os38bb steps2rerun sum_xducer_dx 0 sum_xducer_dy 0 time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 top_plotbin 1 tuv_file refsm_tuv.asc txy_file a_ex.gps ub_type 1920 uhdas_config yearbase = 2017 uhdas_dir = /home/data/EX1708_05 sonar = os38bb gbin = /home/data/EX1708_05/gbin gbinsonar = /home/data/EX1708_05/gbin/os38 raw = /home/data/EX1708_05/raw rawsonar = /home/data/EX1708_05/raw/os38 rbin = /home/data/EX1708_05/rbin proc = /home/data/EX1708_05/proc procsonar = /home/data/EX1708_05/proc/os38bb other attributes: gbin_params = hdg_inst : gyro hdg_inst_msgs : [('gyro', 'hdg'), ('posmv', 'pmv')] hdg_msg : hdg pitch_inst : posmv pitch_msg : pmv pos_inst : cnav pos_msg : gps roll_inst : posmv roll_msg : pmv hcorr = ['posmv', 'pmv', 0.0] acc_heading_cutoff = 0.028 update_gbin False vardoc False varvals False wtrk_step 7 xducer_dx 0 xducer_dy 0 yearbase 2017 configured to run the following steps: write_clearflags scandata avg_and_load codaseditsetup setflags getnav lst_hdg plot_headcorr navsteps find_pflags apply_edit navsteps lst_temp plot_temp lst_npings calib matfiles adcpsect refabs smoothnav putnav refplots find_pflags codaseditsetup 2017-09-16 02:49:30,943 INFO quick_adcp --------------------------------------------- 2017-09-16 02:49:30,943 INFO quick_adcp step 1: set up files in "edit" directory 2017-09-16 02:49:30,943 INFO quick_run file exists (edit/clearflags.tmp). not writing 2017-09-16 02:49:30,943 INFO quick_adcp --------------------------------------------- 2017-09-16 02:49:30,943 INFO quick_adcp step 2: scan files for time range 2017-09-16 02:49:30,943 DEBUG quick_npy Starting: scanping 2017-09-16 02:49:30,944 ERROR quick_npy Failure in: scanping Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_npy.py", line 1037, in run_calc Calc() File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_npy.py", line 283, in __call__ gbinsonar= uhdas_cfg.gbinsonar) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/rdiraw.py", line 1701, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range 2017-09-16 02:49:30,945 DEBUG quick_npy Ending: scanping 2017-09-16 02:49:30,945 ERROR quick_adcp cannot run numpy scan Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_adcp.py", line 1115, in quick_adcp proc.run_scanping_npy() #UHDAS data File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_npy.py", line 1055, in run_scanping_npy self.run_calc('scanping', **kw) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_npy.py", line 1040, in run_calc raise quickFatalError('Q_npy.runcalc: %s failure ', calcname) quickFatalError: ('Q_npy.runcalc: %s failure ', 'scanping') 2017-09-16 02:49:30,945 ERROR root running quick_adcp Traceback (most recent call last): File "/usr/local/currents/bin/run_quick.py", line 172, in quick_adcp(['--cntfile', cntfile_proc]) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_adcp.py", line 1130, in quick_adcp trddlist = proc.get_time_range(timefile, time_range_string) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_subs.py", line 147, in get_time_range TF = open(timefile,'r') IOError: [Errno 2] No such file or directory: 'scan/a_ex.scn'