2018-06-26 22:50:09,507 INFO     quick_adcp   importing numpy version 1.8.2
2018-06-26 22:50:09,519 INFO     quick_adcp   importing matplotlib version 1.4.3
2018-06-26 22:50:09,622 INFO     quick_adcp   =====================================================
2018-06-26 22:50:09,622 INFO     quick_adcp   =====================================================
2018-06-26 22:50:09,622 INFO     quick_adcp   command line was: /usr/local/currents/bin/run_quick.py -d os38bb
2018-06-26 22:50:09,622 INFO     quick_adcp   cwd is /home/data/EX1806_2/proc/os38bb
about to run these steps:
 - write_clearflags
 - scandata
 - avg_and_load
 - codaseditsetup
 - setflags
 - getnav
 - lst_hdg
 - plot_headcorr
 - navsteps
 - find_pflags
 - apply_edit
 - navsteps
 - lst_temp
 - plot_temp
 - lst_npings
 - calib
 - matfiles
 - adcpsect
 - refabs
 - smoothnav
 - putnav
 - refplots
 - find_pflags
 - codaseditsetup
2018-06-26 22:50:09,625 INFO     quick_adcp   ---------------------------------------------
2018-06-26 22:50:09,625 INFO     quick_adcp   step 1: set up files in "edit" directory 

2018-06-26 22:50:09,625 INFO     quick_adcp   ---------------------------------------------
2018-06-26 22:50:09,625 INFO     quick_adcp   step 2: scan files for time range

2018-06-26 22:50:09,641 INFO     quick_adcp   looking for database with adcpdb/a_ex*.blk
2018-06-26 22:50:09,641 INFO     quick_adcp   database found: listing blocks
2018-06-26 22:50:09,648 INFO     quick_adcp   ---------------------------------------------
2018-06-26 22:50:09,648 INFO     quick_adcp   step 3: generate averaged data...
2018-06-26 22:50:09,667 INFO     quick_adcp   ---------------------------------------------
2018-06-26 22:50:09,667 INFO     quick_adcp   step 4: load averaged data (to database)
2018-06-26 22:50:09,692 INFO     quick_adcp   database time range:
2018-06-26 22:50:09,692 INFO     quick_adcp   2018/06/24  09:11:56 to 2018/06/26  22:45:11
2018-06-26 22:50:09,692 INFO     quick_adcp   (174.383287 to 176.948044)
2018-06-26 22:50:09,697 INFO     quick_adcp   ---------------------------------------------
2018-06-26 22:50:09,697 INFO     quick_adcp   step 5: set up files for codas editing (gautoedit.py)

2018-06-26 22:50:09,697 INFO     quick_adcp   ---------------------------------------------
2018-06-26 22:50:09,697 INFO     quick_adcp   step 6: run setflags?

2018-06-26 22:50:09,708 INFO     quick_adcp   ---------------------------------------------
2018-06-26 22:50:09,708 INFO     quick_adcp   step 7: get navigation

2018-06-26 22:50:09,930 INFO     quick_adcp   ---------------------------------------------
2018-06-26 22:50:09,930 INFO     quick_adcp   step 8: list heading

2018-06-26 22:50:09,936 INFO     quick_adcp   ---------------------------------------------
2018-06-26 22:50:09,936 INFO     quick_adcp   step 9: plot heading correction

2018-06-26 22:50:10,144 INFO     quick_adcp   
-------------------------
2018-06-26 22:50:10,144 INFO     quick_adcp   ---- running navsteps ---
2018-06-26 22:50:10,144 INFO     quick_adcp   -------------------------
2018-06-26 22:50:10,144 INFO     quick_adcp   step 10: nav steps: run adcpsect
2018-06-26 22:50:10,144 INFO     quick_adcp   navstep 1
2018-06-26 22:50:10,152 INFO     quick_adcp   -------------------------
2018-06-26 22:50:10,152 INFO     quick_adcp   step 11: nav steps: run refabs
2018-06-26 22:50:10,152 INFO     quick_adcp   navstep 2
2018-06-26 22:50:10,158 INFO     quick_adcp   -------------------------
2018-06-26 22:50:10,158 INFO     quick_adcp   step 12: nav steps: run smoothr for plots
2018-06-26 22:50:10,158 INFO     quick_adcp   navstep 3
2018-06-26 22:50:10,182 INFO     quick_adcp   -------------------------
2018-06-26 22:50:10,182 INFO     quick_adcp   step 13: nav steps: smooth navigation for velocities
2018-06-26 22:50:10,182 INFO     quick_adcp   navstep 4
2018-06-26 22:50:10,208 INFO     quick_adcp   -------------------------
2018-06-26 22:50:10,208 INFO     quick_adcp   step 14: nav steps: put positions and uvship from refsm into codasdb 
2018-06-26 22:50:10,208 INFO     quick_adcp   navstep 5
2018-06-26 22:50:10,377 INFO     quick_adcp   -------------------------
2018-06-26 22:50:10,377 INFO     quick_adcp   step 15: nav steps: make reflayer plots
2018-06-26 22:50:10,377 INFO     quick_adcp   navstep 6
2018-06-26 22:50:10,787 INFO     quick_adcp   ---------------------------------------------
2018-06-26 22:50:10,787 INFO     quick_adcp   step 10: find profile flags 

2018-06-26 22:50:10,813 INFO     quick_adcp   ---------------------------------------------
2018-06-26 22:50:10,813 INFO     quick_adcp   step 11: apply editing 

2018-06-26 22:50:10,832 INFO     quick_adcp   ---------------------------------------------
2018-06-26 22:50:10,832 INFO     quick_adcp   step 12: run calibration steps 

2018-06-26 22:50:10,899 INFO     quick_adcp   ---------------------------------------------
2018-06-26 22:50:10,899 INFO     quick_adcp   step 13: extract and plot temperature 

2018-06-26 22:50:11,038 INFO     quick_adcp   ---------------------------------------------
2018-06-26 22:50:11,038 INFO     quick_adcp   step 14: extract and plot number of pings per ensemble 

2018-06-26 22:50:11,136 INFO     quick_adcp   ---------------------------------------------
2018-06-26 22:50:11,136 INFO     quick_adcp   step 15: extract matlab "allbins" 

2018-06-26 22:50:11,211 INFO     quick_adcp   ---------------------------------------------
2018-06-26 22:50:11,211 INFO     quick_adcp   writing "cruise_info.txt"